ISSN 1524-0215
Vol. 25, Issue Suppl, 2014May 01, 2014 EDT
Operation of the Advanced Instruments at the Flow Cytometry Resource Center: Extensive User Training vs. Staff-Assistant Service
Operation of the Advanced Instruments at the Flow Cytometry Resource Center: Extensive User Training vs. Staff-Assistant Service
Mazel S.,
Articles in Vol. 25, Issue Suppl, 2014
Vol. 25, Issue Suppl, 2014
- Strand-Specific Transcriptome Sequencing for Challenging SamplesFish RachelGandlur SuvarnaFarmer AndrewBetts Craig
- Development of a Luminex Immunobead-Based Method for Autoantibody DiscoveryFhied CristinaPiper ClintPithadia RaviLiptay Michael J.Borgia Jeffrey A.Pergande Melissa
- Impact of the Development of a Light Microscopy Shared Resource for the University of Rochester Medical Center: A Quantitative AssessmentJepson M.Jordan P.Kasischke K.Brown E.Reed A.Lentine M.Bushnell T.Puzas E.Callahan L.M.
- Case Study: Regulatory Considerations in the Analysis of Human Patient Samples in an Academic Core LabKrasinska K.M.McLaughlin T.M.Ingrande J.Chien A.S.
- Rapid DNA-Seq to Achieve High Coverage Libraries from 1ng – 1 μg in 2 HoursDickman J.Toloue M.M.Risinger J.
- Identification of the Free Cysteinyl Residue and Characterization of the N-glycan Structure in the C-terminal Domain of PCSK9Robinson John H.Spahr ChrisShi Stone D.-H.Wang WeiLu Hsieng S.Hui John O.
- A Novel Approach for Processing LC – Ion Mobility – MS Metabolomics DataAstarita GiuseppePalmer MartinBennett MarkLangridge James I.Shockcor John P.Borthwick AndyIsaac Giorgis
- Separation of N-Glycans with Different Sialic Acid Linkages by Using Novel Superficially Porous Particle HILIC ColumnHuang Y.Boyes B.Orlando R.Tao S.
- Operation of the Advanced Instruments at the Flow Cytometry Resource Center: Extensive User Training vs. Staff-Assistant ServiceMazel S.
- Overview of Production of Protein Using Cell-free SystemsGao Fei Philip
- Biomedical Engineer's Role in Improving the Management of Devices Used for Genomic Medicine ResearchGutierrez O.Hernandez B.
- A Workflow of MS/MS Data Analysis to Maximize the Peptide IdentificationXing LeiYang LiangShan BaozhenZhang Zefeng
- Precise and Accurate Determination of microRNA Precursors by Digital PCRMead E.Wang Y.Patricia H.Jackson S.Pietrzykowski A.Patel S.
- Transcriptome Analysis from Low Cell Numbers: Two RNA-Amplification ApproachesVallandingham J.Peak A.Morrison J.Bailey C.Staehling K.Perera A.Zueckert-Gaudenz K.Kulesa P.Li H.Fleharty B.
- Characterizing Low Stoichiometry Phosphorylation Events without the Requirement for Extensive FractionationThompson J.W.Farnsworth C.L.Silva J.C.Moseley M.A.Soderblom E.J.
- Metabolomics Investigation of Spiked Compound Differences in Human PlasmaAsara JohnNeubert ThomasTurck ChrisCheema Amrita K
- Strategies for Profiling Single Mouse Intestinal Epithelial Cells by Targeted Gene ExpressionMcDowell W.Box A.Staehling K.Wang F.Li L.Zueckert-Gaudenz K.
- Secondary Structures of Plasmodium falciparum Associated with Recombination in Variable Surface Antigen Gene FamiliesQaadri K.Olsen C.
- Evaluating Effects of Cell Sorting on Cellular IntegrityLopez P.Bergeron A.Box A.Brundage K.Chittur S.Cochran M.Meyer E. M.Tighe S.DeLay M.
- Computing Multi-Level Clustered Alignments of Gene-Expression Time-SeriesCraven MarkMuganda-Rippchen Deborah
- Characterizing Sequencing Samples with k-mer Spectra for Good and EvilOwens S.Keegan K.Meyer F.Trimble W. L.
- Reference Proteome Extracts for Mass Spec Instrument Performance Validation and Method DevelopmentRosenblatt MikeUrh MarjetaSaveliev Sergei
- Alternate Cluster Generation for Picomolar NGS LibrariesHuerta G.Heckmann T.Deiderick H.Barnette M.Hunicke-Smith S.P.Podnar J.W.
- Optimization of Capital Research Equipment Usage through RED-iness of InformationShimanuki M.Briones A. Villar
- Opening the Doors to Pre-Commercial TechnologyGeorge Reed A.
- Automated Big Data Analysis in Bottom-up and Targeted Proteomicsvan der Plas-Duivesteijn SuzanneDomański DominikSmith DerekBorchers ChristophPalmblad MagnusMohamme Yassene
- An Improved cDNA Library Generation Protocol for Transcriptome Analysis from a Single CellFish RachelZhang SallyBostick MagnoliaChang CynthiaGandlur SuvarnaFarmer Andrew
- Detecting and Quantifying Low Level Gene Variants in Sanger Sequencing Traces Using the ab1 Peak Reporter ToolRoy S.Schreiber E.
- Effects of RNA Degradation on Performance of the Illumina Whole-Genome DASL HT AssayLi X.Islam MDByers S.W.Riggins R.Goerlitz D.
- Genomics Research Group SessionBaldwin D.Chittur S. V.Raghavachari N.Jafari N.Aquino C.Perera A.Reyero N.G.
- Lessons Learned: A Guide for Implementing and Activating a Centralized Billing SystemMays L.White A. N.
- Optimization of Library Construction Protocol to Sequence Large Fragment Libraries on PacBioPanayotova N.G.Zhou X.H.Yuan GMoraga D.A.Shanker S.
- Nucleic Acid Research Group 2013–2014 Study: Evaluating Library Synthesis Protocols for Sub-Nanogram ChIPSeq samplesCarmical J. RussLytle Christian HNadella VijayanandBeckloff NicholasPerera AnojaTighe ScottChittur Sridar VHerbert ZachAuer Herbert
- Improvement of OMSSA for High Accuracy MS/MS DataAzencott R.Hawke D.H.Kong A.
- A Next Generation Sequencing PCR Primer Design Tool for Sanger Sequencing Confirmation by CEBerosik S.Wenz M.Brzoska P.Schreiber E.Hu F.You X.Lam H.Sovan S.Lim S.-H.Gordeeva K.Ho A.Karger A.
- Nucleic Acid Research Group 2013–2014 Study: Evaluating Library Synthesis Protocols for Sub-Nanogram ChIPSeq samplesCarmical J. RussLytle Christian HNadella VijayanandBeckloff NicholasPerera AnojaTighe ScottChittur Sridar VHerbert ZachAuer Herbert
- A Biosafety Concerns and Solutions for Safe Cell SortingLopez P.Gregory M.
- Deep Sequencing of a Recent Bacterium Found in the Human Oral CavityGhadiri J.Garcia S.Caldwell A.Vinnichenco I.Ouverney C.Ghadiri F.
- SOMAscanTM v3.0: A Sensitive and Reproducible, Multiplex Proteomic Platform that Measures over 1100 Analytes in Complex MatricesKraemer S.Sanders G.Katilius E.King E.Bauer T.Zichi D.Saccomano N.Lollo B.
- Locked Nucleic Acid and TaqMan Probes to Detect KRAS Mutations by Droplet Digital PCR in Colorectal Carcinoma Formalin Fixed Paraffin Embedded Tissue SamplesChapman B.Brown A.Cooper S.Yang W.Karlin-Neumann G.Binder S.Sullivan D.C.
- Antibody Research GroupBagarozzi DennisBrundage KathrynCarnahan RobertCrimmins Dan L.Weis-Garcia FrancesBlum David L.
- Reducing Sample Amounts for Isobaric Tagging Quantitative Proteomics ExperimentsLoprest M.Colangelo C. M.Abbott T. B.
- Combining a Chip-Mate nESI Ion Source with Make-Up Flow Strategy for Increased System Robustness and Sensitivity in nLC-nESI-MSWang C.Jones J.Prosser S.J.Eikel D.
- A Microscope Evaluation Database for the Large Microscopy CoreWiegraebe WinfriedHoffman Steven J
- Comparison of Commonly Used Methods for Protein Relative Quantification in Complex SamplesChoksawangkarn WaeowaleeDhabaria AvantikaWang Yan
- Impact of the Development of a Light Microscopy Shared Resource for the University of Rochester Medical Center: A Quantitative AssessmentJepson M.Jordan P.Kasischke K.Brown E.Reed A.Lentine M.Bushnell T.Puzas E.Callahan L.M.
- Case Study: Regulatory Considerations in the Analysis of Human Patient Samples in an Academic Core LabKrasinska K.M.McLaughlin T.M.Ingrande J.Chien A.S.
- A Practical Evaluation of Next Generation Sequencing & Molecular Cloning SoftwareQaadri K.Moir R.Kearse M.Buxton S.Wilson A.Cheung M.Milicevic B.Hengjie W.Kuhn J.Stones-Havas S.Olsen C.
- Next Generation Sequencing Analysis of Circulating RNAs in Human PlasmaSu XiaopingTang HongliRamagli LouisSun SipingThompson ErikaKhanna Kanhav
- A Molecular Indexing for Improved RNA-SeqToloue M.M.Risinger J.
- Automated Assessment of Next Generation Sequencing Library Preparation Workflow for Quality and Quantity Using the Agilent 2200 TapeStation SystemBorg SolangeSalowsky RuedigerPadmanaban ArunkumarSaligrama DeepakWalker Donna McDadeInche AdamElliott JimLiu Melissa Huang
- An Integrative Approach for Interpretation of Clinical NGS Genomic Variant DataStabley D. L.Chen C.Huang H.Robbins K.Polson S.Sol-Church K.Wu C.Crowgey E. L.
- Characterizing Low Stoichiometry Phosphorylation Events without the Requirement for Extensive FractionationThompson J.W.Farnsworth C.L.Silva J.C.Moseley M.A.Soderblom E.J.
- Metabolomics Investigation of Spiked Compound Differences in Human PlasmaAsara JohnNeubert ThomasTurck ChrisCheema Amrita K
- Strategies for Profiling Single Mouse Intestinal Epithelial Cells by Targeted Gene ExpressionMcDowell W.Box A.Staehling K.Wang F.Li L.Zueckert-Gaudenz K.
- Precise Quantification of Next Generation Sequencing Ion Torrent™ and Illumina Libraries using the QuantStudio™ 3D Digital PCR PlatformSchweitzer P.Harris A.Mandelman D.Jackson S.Cifuentes F.Degoricija L.
- Antibody Fluorophore Conjugation: A Simple Cell-Free Method for Quality ControlRuisaard K.Ramirez K.Dwyer D.Bonilla D.Jewell R.Clise-Dwyer K.MS K. Acklin
- Machine Learning Algorithms Implemented in Image AnalysisChen J.Renner L.Neuringer M.Cornea A.
- The erccdashboard: an R Package for Analysis of External Spike-in RNA Controls in Gene Expression ExperimentsLund S.Pine P.S.Salit M.Munro S.A.
- Evaluating Effects of Cell Sorting on Cellular IntegrityLopez P.Bergeron A.Box A.Brundage K.Chittur S.Cochran M.Meyer E. M.Tighe S.DeLay M.
- Computing Multi-Level Clustered Alignments of Gene-Expression Time-SeriesCraven MarkMuganda-Rippchen Deborah
- Characterizing Sequencing Samples with k-mer Spectra for Good and EvilOwens S.Keegan K.Meyer F.Trimble W. L.
- Reference Proteome Extracts for Mass Spec Instrument Performance Validation and Method DevelopmentRosenblatt MikeUrh MarjetaSaveliev Sergei
- Alternate Cluster Generation for Picomolar NGS LibrariesHuerta G.Heckmann T.Deiderick H.Barnette M.Hunicke-Smith S.P.Podnar J.W.
- Optimization of Capital Research Equipment Usage through RED-iness of InformationShimanuki M.Briones A. Villar
- Evaluation of Billing and Tracking Programs Leads to a Hybrid ApproachRupert A.White A.N.Wagner M.Thornton S.DeLay M.
- Longer Reads Do Not Significantly Improve RNA-seq ResultsChhangawala SagarRudy GabeWu Po-YenTighe ScottWang May D.Baldwin Don A.Grills GeorgeMason Christopher E.the ABRF-NGS ConsortiumRosenfeld Jeffrey
- The ABRF Next Generation Sequencing Study: Multi-platform and Cross-methodological Reproducibility of Transcriptome Profiling by RNA-seqLi ShengTighe ScottNicolet CharlesBaldwin DonGrills Georgethe ABRF-NGS ConsortiumMason Christopher E.
- Effect of Probiotic and Pathogenic Bacteria on Drosophila Intestinal PathologyHegan P.Mooseker M.Handelsman J.Miles J.
- Enabling High-Throughput Discovery of the RNA Transcription Landscape Using a Directional RNA Workflow and a Combinatorial Multiplexing ApproachMunafo Daniela B.Liu PingfangSumner Christine J.Langhorst Bradley W.Dimalanta Eileen T.Davis Theodore B.Stewart Fiona J.
- A Biosafety Concerns and Solutions for Safe Cell SortingLopez P.Gregory M.
- Deep Sequencing of a Recent Bacterium Found in the Human Oral CavityGhadiri J.Garcia S.Caldwell A.Vinnichenco I.Ouverney C.Ghadiri F.
- SOMAscanTM v3.0: A Sensitive and Reproducible, Multiplex Proteomic Platform that Measures over 1100 Analytes in Complex MatricesKraemer S.Sanders G.Katilius E.King E.Bauer T.Zichi D.Saccomano N.Lollo B.
- Locked Nucleic Acid and TaqMan Probes to Detect KRAS Mutations by Droplet Digital PCR in Colorectal Carcinoma Formalin Fixed Paraffin Embedded Tissue SamplesChapman B.Brown A.Cooper S.Yang W.Karlin-Neumann G.Binder S.Sullivan D.C.
- Antibody Research GroupBagarozzi DennisBrundage KathrynCarnahan RobertCrimmins Dan L.Weis-Garcia FrancesBlum David L.
- A Simple Multiplex PCR Approach for Target Enrichment in Next-Gen SequencingZhu QiHebel ChrisZhou Xiaochun
- Keeping Genomic Data Safe on the CloudRilak Z.Wernicke S.Bogicevic I.
- Comparison of Illumina and Ion Torrent RNA-Sequencing and Microarray-based approaches for Profiling the TranscriptomeKusko RebeccaLeClerc AshleySwahn SamanthaLenburg MarcSpira AvrumAlekseyev Yuriy
- Changing of the Guard: Migrating 16S and ITS Diversity Profiling from 454 Onto Alternate NGS PlatformsMcNally R.Johnson M.Kasinadhuni N.Tinning M.McGrath K.
- Accurate Genome Analysis of Single CellsFisch E.Fricke E.Baedker S.Deutsch U.Ahmed R.Loeffert D.Korfhage C.
- Reducing Sample Amounts for Isobaric Tagging Quantitative Proteomics ExperimentsLoprest M.Colangelo C. M.Abbott T. B.
- Combining a Chip-Mate nESI Ion Source with Make-Up Flow Strategy for Increased System Robustness and Sensitivity in nLC-nESI-MSWang C.Jones J.Prosser S.J.Eikel D.
- A Microscope Evaluation Database for the Large Microscopy CoreWiegraebe WinfriedHoffman Steven J
- Comparison of Commonly Used Methods for Protein Relative Quantification in Complex SamplesChoksawangkarn WaeowaleeDhabaria AvantikaWang Yan
- Investigation of Different Hierarchal Clustering Approaches for Protein Identification Directly from Tissue Section in a MALDI Imaging ExperimentCole LauraClench MalcolmClaude EmmanuelleTowers Mark
- Expression Profiling Smackdown: Human Transcriptome Array HTA 2.0 vs. RNA-SeqPalermo MeghannDriscoll HeatherTighe ScottDragon JulieBond JeffShukla ArtiVangala MaheshVincent JamesHunter Tim
- Sequencing Single Human and Bacterial Cells at Low Coverage for Aneuploidy, CNV, and Genotyping ApplicationsTesmer T.Yerramilli S.Carey M.Langmore JCarroll M.Kamberov E.
- Optimization of 384-well Luminex Immunoassays on the FlexMAP 3D System for Routine Analyte Quantitation from Commercial KitsPergande MelissaPithadia RaviBorgia Jeffrey A.Fhied Cristina
- Comparison of Fractionation Strategies Post-Enrichment by Titania Used in the Study of the Phosphoproteome of a Green AlgaMarsh E.L.Alvarez S.Evans B.S.Naldrett M.J.
- A Practical Example of Bringing Computation to DataDowns B.N.Opheim D.M.Hale W.Xi L.Donehower L.A.Kalra D.
- A Novel Analytical Pipeline for de novo Haplotype Phasing and Amplicon Analysis using SMRT® Sequencing TechnologyBowman B.Ranade S.Harting J.Lleras R.
- Requirements for Bacteriophage Growth: Using High Throughput Sequencing to Determine Gene EssentialityDedrick RebekahRubin MichaelHatfull GrahamPérez Joseph
- The HVAC Challenges of Upgrading an Old Lab for High-end Light MicroscopesRichard R.Martone P.Callahan L.M.
- Next-Generation Genomics Facility at C-CAMP: Accelerating Genomic Research in IndiaS ChandanaRussiachand HeikhamH PradeepS ShilpaM AshwiniS SahanaB JayanthAtla GouthamJain SmitaArunkumar NandiniGowda Malali
- Rapid DNA-Seq to Achieve High Coverage Libraries from 1ng – 1 μg in 2 HoursDickman J.Toloue M.M.Risinger J.
- Identification of the Free Cysteinyl Residue and Characterization of the N-glycan Structure in the C-terminal Domain of PCSK9Robinson John H.Spahr ChrisShi Stone D.-H.Wang WeiLu Hsieng S.Hui John O.
- A Novel Approach for Processing LC – Ion Mobility – MS Metabolomics DataAstarita GiuseppePalmer MartinBennett MarkLangridge James I.Shockcor John P.Borthwick AndyIsaac Giorgis
1.
S. M. Operation of the Advanced Instruments at the Flow Cytometry Resource Center: Extensive User Training vs. Staff-Assistant Service. JBT. 2014;25(Suppl):S11-S11.