ISSN 1524-0215
Vol. 22, Issue Suppl, 2011October 01, 2011 EDT
Metabolomics Research Group 2011 Study
Metabolomics Research Group 2011 Study
Asara J.M., Tolstikov V.V., Aronov P., Kesler B., Shulaev V., Turck C.W., Wikoff W.R.,
Articles in Vol. 22, Issue Suppl, 2011
Vol. 22, Issue Suppl, 2011
- Basics of Colocalization AnalysesLacoste J.
- Ion Torrent's Personal Genome Machine coupled with Fluidigm's Access Array Provides a Multiplexed Sample Approach to Rapid Evaluation of Novel Genomic TargetsMyers J.Rothberg J.May A.Roberson D.Boland J.
- Towards Optical DNA Sequencing Using Nanopore ArraysMeller A.
- Studying Whole-Body Protein Turnover Using Stable-Isotope Labeled MiceKoller A.A.Relucio J.Nik S.Dost B.Colognato H.Bandeira N.Chen E.
- When Proteins Misbehave, Try Adding a Little PressurePetrovich R.M.
- Overcoming Problems in Protein Expression and PurificationGillette B.
- A Comparison of Post-DNA Sequencing Dye-Terminator Removal ProtocolsMcCoy A.Zianni M.
- Comparison of Data Envelopment Analysis Models to Identify Potential Cancer Biomarker Genes for Colon CancerSanchez-Pena M.E.Isaza C.E.Cabrera-Rios M.Diaz-Candelas P.
- Improvements in SOLiD™ Whole Transcriptome Library Preparation Workflow to Enable Low Input RNA AmountsSan Jose Hinahon C.
- Comparison of Custom Target Enrichment Methods; Agilent vs. NimblegenBodi K.Adams P.S.Bintzler D.Dewar K.Grove D.S.Kieleczawa J.Lyons R.H.Neubert T.Noll A.C.Singh S.Steen R.Zianni M.Perera A.
- (R2) Antibodies: Moving Closer to Personalized Therapeutics and DiagnosticsUmeck R.Harlan J.E.Curtis B.R.
- Multi-Functional Superparamagnetic Iron Oxide Particles as Cancer Therapeutic AgentsGannett P.M.Barr J.A.Carroll R.L.Yedlapalli S.L.Narayanan A.
- Chip or Seq: Helping Clients ChooseBaldwin D.
- Comparison of Custom Target Enrichment Methods: Agilent vs. NimblegenAdams P.S.Bintzler D.Perera A.Dewar K.Grove D.S.Kieleczawa J.Lyons R.H.Neubert T.Noll A.C.Singh S.Steen R.Zianni M.Bodi K.
- Increasing Protein Identification Using Coupled Chip Based NanoLC ColumnsYoung J.B.van Soest R.Neyer D.W.Hunter C.L.Hebert N.
- Detecting Immune System Response Proteins in a 500 Year-old Inca MummyCorthals A.Davalos L.Martin D.W.Rieger R.Chen E.I.Koller A.
- Microsoft Biology Initiative: .NET Bioinformatics Platform and ToolsDiaz Acosta B.
- Trudeau Institute Molecular Biology Core FacilityMoquin A.M.Hoffman J.J.Adams P.
- Science and Technology at a High Throughput Genome CenterWilson R.The Genome Center Production GroupFulton L.
- Vaccine and Therapeutic Protein Manufacture in PlantsRyan T.E.
- Assembling Complete Genomes from Complex MixturesMeyer F.
- Probabilistically Assigning Sites of Protein Modification with Scaffold PTMVincent-Maloney N.Searle B.C.Turner M.
- In-Depth Analysis of Human and Mouse Plasma Using 3-D and 4-D Fractionation StrategiesSpeicher D.W.
- Implementation of GeneSifter Improves Workflow Management within a Core FacilityBoland J.Bacior J.Lonsberry V.McCary A.
- RNA-Seq Analysis with NextGENe SoftwareYou Y.Liu C.McGuigan J.
- Development of a High-Sensitivity Targeted MRM Assay for Peptide and Protein QuantificationBartlett A.Hughes C.Langridge J.McKenna T.
- Better Outcomes for Our Patients: Moving Science Forward in the Biomolecular Core Laboratory at the Nemours Center of Pediatric ResearchStabley D.L.Hitchens E.C.Geller P.Sol-Church K.Holbrook J.
- Protein Sequencing Research Group(PSRG): Results of the PSRG 2011 Study: Sensitivity Assessment of Edman and Mass Spectrometric Terminal Sequencing of an Unknown ProteinSmith J.S.Sandoval W.Xiang B.Mawuenyega K.Suckau D.Katta V.Walters J.J.Hunziker P.Remmer H.
- Fully Automated Sample Preparation Methods for High Throughput Transcriptome Analysis by Arrays and NGSKeilholz W.Heath J.D.Kain S.
- Discovery, Identification and Localization of Post-Translational ModificationsBandeira N.
- GeneXplain — Identification of Causal Biomarkers and Drug Targets in Personalized Cancer PathwaysKolpakov F.Poroikov V.Selivanova G.Kel A.
- (w6) Current State and Future of Capillary Electrophoresis and Sanger SequencingAdam D.Schweitzer P.Vennemeyer E.Zianni M.Kieleczawa J.
- A Collaborative Life Cycle Process for the Bioinformatics Core FacilityKibbe W.A.Lin S.
- Improving the Comprehensiveness of Large-Scale Proteomics Experiments Using Advanced Computational Tools and Accurate Multiple Hypothesis Testing StatisticsEgertson J.Frewen B.Kall L.Noble W.MacCoss M.J.
- A Methodology Study for Metagenomics Using Next Generation SequencersAlbert I.Bintzler D.Bodi K.Bruns M.Dewar K.Gloor G.Johnson T.Kieleczawa J.Lyons R.H.Neubert T.Perera A.G.Singh S.Steen R.Zianni M.Grove D.
- The University of Texas at Austin — Protein and Metabolite Analysis FacilityLo H.Geigerman F.Mercado M.Person M.Gadush M.
- Fast QC of Intact Monoclonal Antibodies Using MALDI-Top-Down SequencingPaape R.Vorwerg L.Suckau D.Resemann A.
- Metabolic Biomarkers, Metabolic Networks, and Pathway AnalysisTolstikov V.
- Metabolomics Research Group 2011 StudyAsara J.M.Tolstikov V.V.Aronov P.Kesler B.Shulaev V.Turck C.W.Wikoff W.R.
- A Web Based Tool for Efficient Management and Use of Research Core FacilitiesWilkie L.Miller L.Turpen P.
- Microarray Analysis of Fluorescence Activated Cell Sorter-Derived Cells: Creating Harmony between TechnologiesTighe S.
- Detection of p53 Phosphorylation and Oligomerization Using Proximity Ligation AssayHuwiler K.Bruinsma R.Marks B.Schweitzer B.Settineri T.Shannon M.Ruff D.Chen S.M.
- Robotic Scripts, Methods, Reagents, and Devices for High Throughput Automated Production of Next Generation Sequencing DNA Fragment LibrariesAllen M.Poulter K.Zhang W.Landers M.Mandelman D.Laubert B.Harris A.Bennett R.Bishop J.
- Differential Expression of Proteins in Lung Cancer Using Difference in Gel Electrophoresis (DIGE)Beckett P.Aulak K.S.Masri F.
- Quantification of Eicosanoid Pathway Proteins in Human Cerebrospinal Fluid Using a Dual Pressure Linear Ion Trap Mass SpectrometerHorner J.Fonteh A.Kauffman S.Huhmer A.Harrington M.Biringer R.
- Determining miRNA Expression Levels in Degraded RNA Samples Using Real-Time RT-qPCR and Microarray TechnologiesTighe S.Holbrook J.Nadella V.Carmical R.Sol-Church K.Yueng A.T.Chittur S.
- A Multi-Laboratory Study Assessing Robustness and Reproducibility of Plasma Reference Sample for Benchmarking LC-MS Platform PerformanceCampos A.Oliveira E.Martinez-Bartolome S.Canals F.Albar J.P.
- Investigating the Robustness of a New Microfluidic DeviceLangridge J.McKenna T.Hughes C.
- Why Reproducible Outcomes are Essential in Proteomic Research and Why Standardisation of Processes is Essential for Achieving ReproducibilityDracup W.Borthwick A.
- Fragment Analysis of Carbohydrates Following Capillary ElectrophoresisHulce D.Li F.Li X.Liu C.S.Snyder-Leiby T.
- The Application of Targeted and Exome Sequencing for the Identification of Spontaneous and Induced Mutations in MiceAntoniou E.Daigle S.Ding Y.Zhang W.Reinholdt L.Barter M.Rowe L.Hinerfeld D.
- Comparing Protein and mRNA Abundances to Protein Expression RegulationLaurent J.M.Kwon T.Craig S.A.Boutz D.R.Huse H.K.Nozue K.Walia H.Whiteley M.Ronald P.C.Abreu Rde S.Ko D.Le S.Y.Shapiro B.A.Burns S.C.Sandhu D.Penalva L.O.Marcotte E.M.Vogel C.
- The Protein and Nucleic Acid (PAN) Facility at Stanford UniversityEckart M.Kosovilka N.Sanchez A.Tran Y.Walker P.Winant R.Zuo E.Patel S.
- UHR-Q-TOF Analysis Can Address Common Challenges in Targeted and Untargeted MetabolomicsZurek G.Krug D.Muller R.Barsch A.
- Successful Protein ProductionCulp J.
- Purification of Bacterial APOA-1 and Characterization of Novel Anti-Cancer Drug Delivery SystemLacko A.Young T.
- Designing an Institutional Web-based Core Facility Management SystemTabarini D.Clisham S.John D.Hagen A.
- Biological Application of Constrained PeptidesCastro M.Fazeli H.Murage E.
- PeaksDB: New Software for Substantially Improved Peptide Identification from Orbitrap ETD Mass SpectrometryZhang J.Xin L.Shan B.Chen W.Ma B.
- PRG-2011: Defining the Interaction Between Users and Suppliers of Proteomics Services/FacilitiesAndacht T.M.Bunger M.K.Bystrom C.E.Dangott L.J.Molina H.Moritz R.L.Settlage R.E.Turck C.W.Hawke D.H.
- A New Sequencing Primer and Workflow Increase 5' Resolution and Throughput on HLA SequencingHung S.C.Berosik S.Wenz M.Schneider S.Ma P.Berchanskiy D.Dinauer D.Chuu J.
- Integrated Bioinformatics for MS-Based ProteomicsDeutsch E.
- Benchmarking miRNA Expression Levels in Degraded RNA Samples Using Real-Time RT-qPCR and Microarray TechnologiesChittur S.V.Tighe S.Nadell V.Carmica R.Sol-Church K.Yeung A.T.Holbrook J.
- Danforth Center: Proteomics & Mass Spectrometry Core FacilityAlvarez S.Zhang B.Liu Z.Wang H.Fazlic J.Hicks L.
- ABRF Affiliates and ChaptersGrills G.Detwiler M.Jennings S.F.
- Developing a Redox-Sensitive Red Fluorescent Protein BiosensorKoon N.Yei S.M.Risenmay A.J.Kallio K.Remington S.J.Magpiong I.
- Optimization of Nanospray Voltage and Spray Stability: Impact on Chromatographic Peak Area for Analyte QuantitationLee M.Berg A.Valaskovic G.
- PCR-Free Nextera Di-Tagged DNA Library Preparation for NGS ApplicationsGrunenwald H.Baas B.Goryshin I.Caruccio N.Maffitt M.Kinross C.
- Microscale Thermophoresis: Interactions of Proteins, Small Molecules, Nucleic Acids, and VesiclesBaaske P.Duhr S.
- A Case Study: Molecular Profiling of Breast Cancer from Formalin-Fixed, Archival Material — Gene Expression Profiles from FFPE Samples with Improved RNA Decrosslinking TechnologyQuabius S.Krupp G.Jaggi R.
- Center for Genome Research and Biocomputing at Oregon State UniversityDasenko M.Girard A.Peterson M.Sullivan C.Carrington J.C.Rosato C.
- Gene Synthesis: A Cost-Effective Alternative to Traditional Molecular CloningSchwartz M.Lo H.Zhou J.Yang P.Liao A.
- On-Line Electrochemistry/MS - A Powerful Tool for Rapid Prediction of Phase I and II Drug MetabolismPurkerson J.Kraj A.Eysberg M.Chervet J.P.Powers J.
- United States Department of Agriculture/Agricultural Research Service (USDA-ARS) Eastern Regional Research Center Core TechnologiesNunez A.Strahan G.Soroka D.S.Damert W.Needleman D.
- Win on Sunday, Sell on Monday: From the Exome Sequencing of One Boy to the Delivery of Clinical DiagnosticsTschannen M.R.
- Integrated Core Facility Support and Optimization of Next Generation Sequencing TechnologiesSchweitzer P.Sun Q.Pillardy J.Wang W.Stelick T.Bukowski R.Ponnala L.VanEe J.Grills G.
- High Sensitivity Protein Quantitation Using a Triple Quadrupole with a Dual Ion FunnelYang Y.Waddell K.Miller C.
- 2-D DIGE Analysis of Multicellular Tumor Spheroids in Evaluation of Breast Cancer TreatmentWinkvist M.Grimsby S.Monazzam A.Nyamekye K.Hagner-McWhirter A.Ruddat V.
- RNA-Seq Analysis with NextGENe SoftwareYou Y.Liu C.McGuigan J.
- Development of a High-Sensitivity Targeted MRM Assay for Peptide and Protein QuantificationBartlett A.Hughes C.Langridge J.McKenna T.
- Better Outcomes for Our Patients: Moving Science Forward in the Biomolecular Core Laboratory at the Nemours Center of Pediatric ResearchStabley D.L.Hitchens E.C.Geller P.Sol-Church K.Holbrook J.
- Protein Sequencing Research Group(PSRG): Results of the PSRG 2011 Study: Sensitivity Assessment of Edman and Mass Spectrometric Terminal Sequencing of an Unknown ProteinSmith J.S.Sandoval W.Xiang B.Mawuenyega K.Suckau D.Katta V.Walters J.J.Hunziker P.Remmer H.
- Fully Automated Sample Preparation Methods for High Throughput Transcriptome Analysis by Arrays and NGSKeilholz W.Heath J.D.Kain S.
- Increasing the Sample Loading Capacity for Peptide Analysis by LCMS/MS Using 150 μm ID Packed Tip ColumnsSvobodova H.Marshall-Waggett C.Valaskovic G.Berg A.
- (w13) Institutional Core ManagementTurpen P.Farber G.K.Mische S.Alexander P.Auger J.Meyn S.
- (w9) Therapeutic Antibodies: Over-Hyped “Magic Bullet”, or Under-Explored Technology?Harlan J.E.Weis-Garcia F.Crimmins D.L.
- Bravo Automated Liquid Handling Platform for SureSelect Target EnrichmentVisitacion M.Karbowski J.Novak B.Ravi H.Ong J.Joshi S.Pabon-Pena C.LeProust E.Roberts D.Happe S.Giuffre A.
- Microarray Research Group Projects, 2010–11Reyero-Vinas N.G.Jafari N.Baldwin D.
- Protein Cleavage, Disulfide Bonds Reduction, Metabolite Synthesis and Much More Using Electrochemistry/MSPurkerson J.Kraj A.Eysberg M.Chervet J.P.Powers J.
- Analysis of Intact Proteins in BiotechnologyDiFeo D.Wirth H.J.Gooley A.Freeman R.
- ABRF-sPRG2011 Study: Development of a Comprehensive Standard for Analysis of Post-Translational ModificationsColangelo C.Dufresne C.P.Farmar J.G.Friedman D.B.Kinsinger C.Lilley K.S.Mechtler K.Phinney B.S.Shaffer S.A.Weintraub S.T.Ivanov A.
- Genome Technology Center at the NYU Langone Medical Center: New Support for Clinical and Translational ScienceMische S.Zavadil J.
- Improving Human Nutrition from the Ground Up: Linking Agriculture to Human HealthWelch R.M.
- Critical Reagent Analytical Characterization Program at GenentechWilliams C.Meier A.Lu C.Motchnik P.Chamberlain S.
- PRG-2011: Defining the Interaction Between Users and Suppliers of Proteomics Services/FacilitiesAndacht T.M.Bunger M.K.Bystrom C.E.Dangott L.J.Molina H.Moritz R.L.Settlage R.E.Turck C.W.Hawke D.H.
- A New Sequencing Primer and Workflow Increase 5' Resolution and Throughput on HLA SequencingHung S.C.Berosik S.Wenz M.Schneider S.Ma P.Berchanskiy D.Dinauer D.Chuu J.
- Early Elements of a Pipeline for Single Bacterial Cell GenomicsRelman D.A.
- Protein-Binding Assays in Biological Liquids Using Microscale ThermophoresisBaaske P.Wienken C.Willemsen M.J.Braun D.Duhr S.
- Characterization of Unexpected By-Products in a Recombinant TAU Protein by Capillary LC Coupled to MALDI-Top-Down-Sequencing (LCMALDI-TDS)Kovacech B.Kovac A.Suckau D.Asperger A.
- Overview of the Illumina Sequencing Platform at the Broad InstituteConnolly K.
- Discovery of Yersinia pestis and Yersiniophage Peptide Targets for Use in Multiple Reaction Monitoring MethodsBearden S.Luna L.
- The Agilent Technologies' SureSelect™ All Exon Product Portfolio: High Performance Target Enrichment System for Human and Mouse Exome Sequencing on Illumina and SOLiD PlatformsGiuffre A.Pabon-Pena C.Novak B.Joshi S.Ong J.Visitacion M.Hamady M.Useche F.Eberle J.Hunt S.Happe S.Roberts D.Leproust E.Ravi H.
- Progress towards Becoming a CLIACertified Core FacilityGray M.Sandoval M.McCann S.Gorda S.McMillan M.
- Improvements in SOLiD™ Whole Transcriptome Library Preparation Workflow to Enable Low Input RNA AmountsSan Jose Hinahon C.
- Comparison of Custom Target Enrichment Methods; Agilent vs. NimblegenBodi K.Adams P.S.Bintzler D.Dewar K.Grove D.S.Kieleczawa J.Lyons R.H.Neubert T.Noll A.C.Singh S.Steen R.Zianni M.Perera A.
- (R2) Antibodies: Moving Closer to Personalized Therapeutics and DiagnosticsUmeck R.Harlan J.E.Curtis B.R.
- Multi-Functional Superparamagnetic Iron Oxide Particles as Cancer Therapeutic AgentsGannett P.M.Barr J.A.Carroll R.L.Yedlapalli S.L.Narayanan A.
- Chip or Seq: Helping Clients ChooseBaldwin D.
- Comparison of Custom Target Enrichment Methods: Agilent vs. NimblegenAdams P.S.Bintzler D.Perera A.Dewar K.Grove D.S.Kieleczawa J.Lyons R.H.Neubert T.Noll A.C.Singh S.Steen R.Zianni M.Bodi K.
- Increasing Protein Identification Using Coupled Chip Based NanoLC ColumnsYoung J.B.van Soest R.Neyer D.W.Hunter C.L.Hebert N.
- Detecting Immune System Response Proteins in a 500 Year-old Inca MummyCorthals A.Davalos L.Martin D.W.Rieger R.Chen E.I.Koller A.
- Microsoft Biology Initiative: .NET Bioinformatics Platform and ToolsDiaz Acosta B.
- Trudeau Institute Molecular Biology Core FacilityMoquin A.M.Hoffman J.J.Adams P.
- Science and Technology at a High Throughput Genome CenterWilson R.The Genome Center Production GroupFulton L.
- Vaccine and Therapeutic Protein Manufacture in PlantsRyan T.E.
- Assembling Complete Genomes from Complex MixturesMeyer F.
- Probabilistically Assigning Sites of Protein Modification with Scaffold PTMVincent-Maloney N.Searle B.C.Turner M.
- In-Depth Analysis of Human and Mouse Plasma Using 3-D and 4-D Fractionation StrategiesSpeicher D.W.
- Implementation of GeneSifter Improves Workflow Management within a Core FacilityBoland J.Bacior J.Lonsberry V.McCary A.
- Comparing Global and Targeted Lipid and Fatty Acid Shotgun Profiling of Brain Tissue Extracts by NanoESIInfusionSimons B.Impey G.Duchoslav E.Koisten K.Ekroos K.Albanese J.
- Development of a Label-Free Quantitative Phosphoproteomics Platform Applicable to Non-Cell Culture Biological MatricesFoster M.W.Thompson J.W.Moseley M.A.Soderblom E.
- Point Spread Functions, Spectral Calibration, and BeyondCole R.Stack R.
- Early Elements of a Pipeline for Single Bacterial Cell GenomicsRelman D.A.
- Protein-Binding Assays in Biological Liquids Using Microscale ThermophoresisBaaske P.Wienken C.Willemsen M.J.Braun D.Duhr S.
- Characterization of Unexpected By-Products in a Recombinant TAU Protein by Capillary LC Coupled to MALDI-Top-Down-Sequencing (LCMALDI-TDS)Kovacech B.Kovac A.Suckau D.Asperger A.
- Overview of the Illumina Sequencing Platform at the Broad InstituteConnolly K.
- Discovery of Yersinia pestis and Yersiniophage Peptide Targets for Use in Multiple Reaction Monitoring MethodsBearden S.Luna L.
- The Agilent Technologies' SureSelect™ All Exon Product Portfolio: High Performance Target Enrichment System for Human and Mouse Exome Sequencing on Illumina and SOLiD PlatformsGiuffre A.Pabon-Pena C.Novak B.Joshi S.Ong J.Visitacion M.Hamady M.Useche F.Eberle J.Hunt S.Happe S.Roberts D.Leproust E.Ravi H.
- Progress towards Becoming a CLIACertified Core FacilityGray M.Sandoval M.McCann S.Gorda S.McMillan M.
- Utilization of Flow Cytometry in Personalized MedicineLopez P.
- Cornell University Life Sciences Core Laboratories CenterVanEe J.Schweitzer P.Zhang S.Williams R.Pillardy J.Sun Q.Wang W.Li Y.Betel D.Stelick T.Spisak J.Cote L.Cameron R.Wroblewski H.Hover B.Zhang L.Mosher J.Xin Y.Westby G.Busuttil J.Monni S.Sherwood R.Ptak A.C.Chen W.McCardle J.Bayles C.Dela Cruz J.Riccio M.Bukowski R.Ponnala L.Myers C.Singh H.Howard M.Flaherty J.Manocchia A.Dodge E.Smith K.Aquadro C.Melnick A.Brenna T.Zipfel W.Clark A.Siepel A.Carr L.Rose J.K.C.Grills G.
- GenomeView: Visualizing the Next-Generation of DataAbeel T.
- Next Generation Quantitative Proteomic Tools for Analyzing Histone ModificationsGarcia B.A.
- (w11) The Business of Running A Core FacilityBobin S.A.Ambulos N.P.
- Evaluation of DNA Whole Genome Amplification Technologies for GenotypingDagnall C.Nicolet C.Escobar H.Blake S.Sanderson B.Kingham B.Jonscher K.Hutchinson A.
- Pathway Analysis in Expression ProteomicsZubarev R.A.
- Identification of Various Pink-Red Pigments Formed by Reacting Various Amino Acids with Onion (allium cepa L.) Thiosulfinates Using HPLC with Diode Array Detector and Tandem Mass SpectrometryLee E.Yoo K.Russell D.Patil B.Rezenom Y.
- iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass SpectraAskenazi M.Bandeira N.Chalkley R.J.Clauser K.R.Deutsch E.Lam H.H.N.McDonald W.H.Neubert T.Rudnick P.A.Martens L.
- Ultrahigh-Performance Nano LC-MS/MS Analysis of Complex Proteomic SamplesSneekes E.J.de Haan B.Swart R.Gendeh G.
- Screening for Optimal Purification Conditions for Histidine-Tagged Water-Soluble and Membrane Proteins Using Magnetic Beads MethodsMascher E.Risberg G.Hedlund H.
- Dining in with Trillions of Fascinating Friends: Exploring Our Human Gut Microbiome in Health and DiseaseGordon J.I.
- Clinical Proteomic Technologies for Cancer: NIH-Funded Measurement ScienceBoja E.Hiltke T.Mesri M.Rahbar A.Rivers R.Rodriguez H.Kinsinger C.R.
- Integrative Bioinformatics for Genomics and ProteomicsWu C.H.
- High-Throughput Next Generation Sequencing Methods and ApplicationsWang M.Newsham I.Wu Y.Q.Dinh H.Kovar C.Santibanez J.Sabo A.Reid J.Bainbridge M.Boerwinkle E.Albert T.Gibbs R.Muzny D.
- Quantitative miRNA Expression Analysis Using Fluidigm Microfluidics Dynamic ArraysSung Jang J.Simon V.A.Feddersen R.M.Rakhshan F.Schultz D.A.Zschunke M.A.Lingle W.L.Kolbert C.P.Jen J.
- Facile Solid-Phase Synthesis of Peptide-p-Nitroanilide (pNA) Analog Containing Conjugates Using a Novel Wang or Rink Amide ResinPo C.He J.Hong A.Wang X.
- Use of Synthetic Transcript Pools to Evaluate RNA-Seq Performance and Analytical MethodsQu L.Lemire A.Brockman J.Heater S.Schageman J.Gu J.Lea K.San Jose C.Hernandez N.Batten D.Bramlett K.Ilsley D.Mueller C.Setterquist R.Whitley P.
- Deconvolution: Core Concepts, Algorithms and Advanced IssuesBeavers N.Northan B.
- Using 200 μm ID cHiPLC Columns for Increased Sample Throughput in Peptide QuantitationHebert N.Neyer D.W.Young J.B.van Soest R.
- Conclusions from the MIRG 2010 Benchmark Study: Molecular Interactions in a Three Component System and Presentation of 2011 Survey Results on Label-Free TechnologiesYadav S.P.Bergqvist S.Doyle M.L.Eisenstein E.Robinson M.K.Neubert T.Yamniuk A.P.
- Overview of the Agilent Technologies SureSelectTM Target Enrichment SystemGiuffre A.Joshi S.Ravi H.Pabon-Pena C.Novak B.Visitacion M.Hamady M.Useche F.Arezi B.Buehler B.Lin E.Hunt S.Roberts D.Happe S.Leproust E.Ong J.
- Automated Isolation of Genomic DNA from Large Volumes of Whole BloodKrueger S.Kennedy J.Lee S.Helt C.Bonk A.Cowan C.Vincent E.
- Modification of the Transplex WTA2 Amplification Product for Next Generation SequencingWard B.Fenoglio D.Heuermann K.
- A Methodology Study for Metagenomics Using Next Generation SequencersGrove D.Singh S.
- Effective Semi-Automated Extraction of Intact Mitochondria from Solid Tissues Using Gentle Mechanical Homogenization and Pressure Cycling TechnologyCarlson G.Freeman E.Ivanov A.R.Lazarev A.Gross V. S.
- Tools for Next Generation Sequencing Data AnalysisBodi K.
- Simplified Reagents and Workflows for Robust Sample Preparation of DNA, mRNA, and Small RNAHendrickson C.L.Apone L.M.Munafo D.B.Meyer C.R.Stewart F.J.
- Stable Isotope Tracers Applied to Measuring Rates of Protein Synthesis and Breakdown in Muscle: Principles and ApplicationsWolfe R.R.
- MicroRNA Analysis Using RNA Extracted from Matched Formalin-Fixed Paraffin-Embedded (FFPE) and Fresh Frozen Samples on SOLiD™ SystemGu J.Zeringer E.Heater S.Schageman J.Mueller C.Bramlett K.Lea K.
- Quantitative Western Blotting with Amersham ECL PrimeGrimsby S.Soderquist K.Marcusson A.Winkvist M.
- PSRG 2011 Study Results: Sensitivity Assessment of Terminal Sequencing Techniques Using an Unknown ProteinSandoval W.Mawuenyega K.Smith J.S.Remmer H.Xiang B.Suckau D.Katta V.Hunziker P.Walters J.J.
- (ps3) EN Route to the ERA of Genomic MedicineGreen E.D.
- Basics of Colocalization AnalysesLacoste J.
- Ion Torrent's Personal Genome Machine coupled with Fluidigm's Access Array Provides a Multiplexed Sample Approach to Rapid Evaluation of Novel Genomic TargetsMyers J.Rothberg J.May A.Roberson D.Boland J.
- Towards Optical DNA Sequencing Using Nanopore ArraysMeller A.
- Studying Whole-Body Protein Turnover Using Stable-Isotope Labeled MiceKoller A.A.Relucio J.Nik S.Dost B.Colognato H.Bandeira N.Chen E.
- When Proteins Misbehave, Try Adding a Little PressurePetrovich R.M.
- Overcoming Problems in Protein Expression and PurificationGillette B.
- A Comparison of Post-DNA Sequencing Dye-Terminator Removal ProtocolsMcCoy A.Zianni M.
- Comparison of Data Envelopment Analysis Models to Identify Potential Cancer Biomarker Genes for Colon CancerSanchez-Pena M.E.Isaza C.E.Cabrera-Rios M.Diaz-Candelas P.
- Purification of Bacterial APOA-1 and Characterization of Novel Anti-Cancer Drug Delivery SystemLacko A.Young T.
- Designing an Institutional Web-based Core Facility Management SystemTabarini D.Clisham S.John D.Hagen A.
- Biological Application of Constrained PeptidesCastro M.Fazeli H.Murage E.
- PeaksDB: New Software for Substantially Improved Peptide Identification from Orbitrap ETD Mass SpectrometryZhang J.Xin L.Shan B.Chen W.Ma B.
- (w11) The Business of Running A Core FacilityBobin S.A.Ambulos N.P.
- Evaluation of DNA Whole Genome Amplification Technologies for GenotypingDagnall C.Nicolet C.Escobar H.Blake S.Sanderson B.Kingham B.Jonscher K.Hutchinson A.
- Pathway Analysis in Expression ProteomicsZubarev R.A.
- Identification of Various Pink-Red Pigments Formed by Reacting Various Amino Acids with Onion (allium cepa L.) Thiosulfinates Using HPLC with Diode Array Detector and Tandem Mass SpectrometryLee E.Yoo K.Russell D.Patil B.Rezenom Y.
- iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass SpectraAskenazi M.Bandeira N.Chalkley R.J.Clauser K.R.Deutsch E.Lam H.H.N.McDonald W.H.Neubert T.Rudnick P.A.Martens L.
- Integrated Bioinformatics for MS-Based ProteomicsDeutsch E.
- Benchmarking miRNA Expression Levels in Degraded RNA Samples Using Real-Time RT-qPCR and Microarray TechnologiesChittur S.V.Tighe S.Nadell V.Carmica R.Sol-Church K.Yeung A.T.Holbrook J.
- (ps2) Unlocking Biomarker Discovery: Unbiased Human Proteomics at High Scale, Sensitivity, and AccuracyGold L.
- Nucleotide-Level Variant Analysis of Next-Generation Sequencing Data Using a Cloud-Based Data Analysis PipelineAsimenos G.Sundquist A.Ganter B.
- Effects of Particle Porosity on the Separation of Larger MoleculesDiFeo D.Jurgen Wirth H.Gooley A.Freeman R.
- Proteomics Tips and Tricks: From Discovery to Protein-Protein InteractionsCilia M.
- Development of ERCC RNA Spike-In Control MixesLemire A.Lea K.Batten D.Jian Gu S.Whitley P.Bramlett K.Qu L.
- University of Nebraska Medical Center Mass Spectrometry and Proteomics Core FacilityCiborowski P.Wojtkiewicz M.
- Validation of an Ion Mobility Hydrogen/Deuterium Exchange Mass Spectrometry SystemWales T.Stapels M.Eggertson M.Engen J.Fadgen K.
- Semiconductor Sequencing for LifeRothberg J.Myers J.
- PRG-2011: Defining the Interaction between Users and Suppliers of Proteomics ServicesAndacht T.M.Bunger M.K.Bystrom C.Dangott L.Molina H.Moritz R.L.Settlage R.E.Turck C.W.Hawke D.
- United States Department of Agriculture/Agricultural Research Service (USDA-ARS) Eastern Regional Research Center Core TechnologiesNunez A.Strahan G.Soroka D.S.Damert W.Needleman D.
- Win on Sunday, Sell on Monday: From the Exome Sequencing of One Boy to the Delivery of Clinical DiagnosticsTschannen M.R.
- Integrated Core Facility Support and Optimization of Next Generation Sequencing TechnologiesSchweitzer P.Sun Q.Pillardy J.Wang W.Stelick T.Bukowski R.Ponnala L.VanEe J.Grills G.
- High Sensitivity Protein Quantitation Using a Triple Quadrupole with a Dual Ion FunnelYang Y.Waddell K.Miller C.
- Ultrahigh-Performance Nano LC-MS/MS Analysis of Complex Proteomic SamplesSneekes E.J.de Haan B.Swart R.Gendeh G.
- Screening for Optimal Purification Conditions for Histidine-Tagged Water-Soluble and Membrane Proteins Using Magnetic Beads MethodsMascher E.Risberg G.Hedlund H.
- Dining in with Trillions of Fascinating Friends: Exploring Our Human Gut Microbiome in Health and DiseaseGordon J.I.
- Clinical Proteomic Technologies for Cancer: NIH-Funded Measurement ScienceBoja E.Hiltke T.Mesri M.Rahbar A.Rivers R.Rodriguez H.Kinsinger C.R.
- GeneMarker® Genotyping Software: Tools to Increase the Statistical Power of DNA Fragment AnalysisHulce D.Li X.Snyder-Leiby T.Johathan Liu C.S.
- ScriptSeq RNA-Seq Library Preparation Method: A Simplified Work-Flow for Directional NGS RNASeq Library Preparation with Whole-Transcript RepresentationSooknanan R.Hitchen J.Radek A.Khanna A.
- Rubicon PicoPlex-NGS Kits Available for Sequencing Single Cells Using the Illumina Genome AnalyzerKurihara T.Kamberov E.M'Mwirichia J.Tesmer T.Oldfield D.Langmore J.
- Improvements in Data-Dependent Acquisition for Enhanced Protein IdentificationKitagawa N.Tang W.Roark J.Satulovsky J.Perkins P.Miller C.
- UCLA Molecular Instrumentation Center—Proteomics and Mass Spectrometry FacilitiesYan W.Alvarado R.J.Khitrov G.A.Czerwieniec G.Strouse J.Sondej M.
- Skate Genome Project: Cyber-Enabled Bioinformatics CollaborationVincent J.
- Coverage and Recovery of Upstream Protein Fractionation Methods in LC-MS/MS WorkflowsFoster L.J.
- Searchable Core Facility Database: Building Resource BridgesHunter T.Fleming B.
- The Poor-Man's Fractionation of Cellular and Organellar Proteomes at the Stages of Lysis and Proteolytic Digestion, Eliminating the Use of Analytical Fractionation TechniquesIvanov A.R.Freeman E.
- Molecular Resource Facility, UMDNJ New Jersey Medical SchoolKuppasani S.Dhawan K.Donnelly R.
- Utilization of Flow Cytometry in Personalized MedicineLopez P.
- Cornell University Life Sciences Core Laboratories CenterVanEe J.Schweitzer P.Zhang S.Williams R.Pillardy J.Sun Q.Wang W.Li Y.Betel D.Stelick T.Spisak J.Cote L.Cameron R.Wroblewski H.Hover B.Zhang L.Mosher J.Xin Y.Westby G.Busuttil J.Monni S.Sherwood R.Ptak A.C.Chen W.McCardle J.Bayles C.Dela Cruz J.Riccio M.Bukowski R.Ponnala L.Myers C.Singh H.Howard M.Flaherty J.Manocchia A.Dodge E.Smith K.Aquadro C.Melnick A.Brenna T.Zipfel W.Clark A.Siepel A.Carr L.Rose J.K.C.Grills G.
- GenomeView: Visualizing the Next-Generation of DataAbeel T.
- Novel Proteomic Analysis of Esophageal InflammationKendrick A.Fillon S.Robinson Z.Masterson J.Ackerman S.J.Furuta G.T.Jonscher K.
- NERLSCD: A Model for Regional Networking of Life Sciences Core DirectorsDetwiler M.Thannhauser T.Hunter T.Adams P.S.Bobin S.A.Sol-Church K.Spatrick P.Perkins S.Grills G.S.
- A New Technology for Highly Efficient and Reproducible Albumin Depletion from Whole SerumAnderson H.Maust M.Boyce G.Powell M.J.Bolcato C.
- Evaluation of Two Separation Techniques, SCX and OFFGEL and of Two Fragmentation Methods, CAD and PQD, to Asses iTRAQ Quantitation EfficiencyDiFonzo A.Soffientini P.Manousidou T.Grigorean G.
- In Depth Characterization of Protein Changes Induced by Glucose Limitation Using Complementary Ionization TechniquesJabs W.Behrens M.Suckau D.Baessmann C.Niehaus K.Noll T.Müller B.
- A Unique Workflow for Glycoprotein Characterization from Sample Preparation to MS/MS Spectral InterpretationLee R.Albanese J.
- Protein Interactions and Topologies in CellsBruce J.
- Rapid Monoclonal Antibody Glycan Profiling Using an Integrated Microfluidic-Based mAb-Glyco Chip and Quadrupole Time-of-Flight Mass SpectrometryTang N.Waddell K.Miller C.
- Qualitative and Quantitative Characterization of Proteomes Using Ion Mobility Mass Spectrometry with Data Independent AcquisitionFadgen K.Geromanos S.Langridge J.Stapels M.
- Next Generation Quantitative Proteomic Tools for Analyzing Histone ModificationsGarcia B.A.
1.
J.M. A, V.V. T, P. A, et al. Metabolomics Research Group 2011 Study. JBT. 2011;22(Suppl):S25-S25.