ISSN 1524-0215
Vol. 30, Issue Suppl, 2019December 01, 2019 EDT
Cross Site Evaluation of Sanger Sequencing Dye Chemistries
Cross Site Evaluation of Sanger Sequencing Dye Chemistries
Podnar Jessica W.,
Articles in Vol. 30, Issue Suppl, 2019
Vol. 30, Issue Suppl, 2019
- Imaging in Flow in the Correlation SystemLopez Peter
- HDX and Imaging in the CoreSchey Kevin
- iPRG 2019 Metaproteomics StudyDavis Darryl L.Palmblad MagnusWeintraub Susan T.
- Imaging Flow Cytometry for Phytoplankton Analysis: Instrumentation and ApplicationsPoulton Nicole J
- Fluorescence in Situ Hybridization and Nuclear Translocation Events Quantified by Imaging Flow CytometryMinderman Hans
- GBIRG Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis FacilitiesDragon JulieHutchin JohnRiva AlbertonSettles Matthew LeeSui Shannon HoThimmapuram JyothiLevine Stuart
- Genome Editing Session: Trends and Core Functions for CRISPR-Directed Gene EditingKmiec Eric B.
- FCRG - Fixation and Sorting for RNALoof NicolasMehrnoosh AbshariBergeron AlanSaluk AlanBox AndrewBrundage KathleenAdams DaveDwyer KarenMeyer ErnestCochran MatthewHolmes LauraFisher NancyNiziolek ZacharyLopez PeterHarley ReginaRio Guerra Roxana DelThornton Sherry
- From Precision Proteomics To Precision MedicineChen Emily I.Lienert IanBache NicolaiLeBlanc Andre
- FFPE Sequencing and BioinformaticsHoadley Katherine A.
- The BUS Format for Single-Cell RNA-Seq Processing and AnalysisGao Fanda Veiga Beltrame EduardoGehring Jase A.Edljarn Hjoerleifsson Kristin E.Lu LambdaMelsted PaullNtranos VasilisPachter LiorSvensson Valentine
- Systems Imaging to Reveal the Eukaryotic Organelle Interactome and Oral Microbiome Structure and AssemblyValm Alex
- Understanding the Science of Branding When Branding for ScienceDillon Chris
- Single Cell Proteome Mapping of Tissue Heterogeneity Using Microfluidic Nanodroplet Sample Processing and Ultrasensitive LC-MSKelly RyanZhu YingLiang YiranCong YongzhengPiehowski PaulDou MaoweiZhao RuiQian Wei-JunBurnum-Johnson KristinAnsong Charles
- Spectral PhenotypingMcMurray Cynthia
- Single-Cell Genomics: Best Practices and New InsightsAshton John M.
- Developing an Action Plan Using Results from the Committee on Core Rigor and Reproducibility (CCoRRe) SurveyMeyn Susan
- Serial Block Face ImagingGilpin Christopher J
- DolphinNext: A Graphical User Interface for Distributed Data Processing of High Throughput GenomicsKucukural Alper
- Emerging Technologies to Bring Glycoproteomics Within ReachSheeley Douglas M.Azadi ParastooPohl Nicola L.
- SIM Data Acquisition and Processing for Fast Live-Cell ImagingMueller Marcel
- Distribution of Microbial Communities and Antimicrobial Resistances in Urban Environments and on the ISS Space StationBezdan DanielaDanko DavidMason Christopher E.
- Signal Analysis of Nanopore RNA Sequencing to Interrogate Poly(A) Tails and Post-Transcriptional ModificationsRazaghi Roham
- Embracing Error: Using a Systems Approach to Improve Workflow and WorkplaceGirard Isabelle
- Engineered AsCas12a Variants with Enhanced Activity and Broadened PAM CompatibilityCollingwood Michael A.Vakulskas Christopher A.Zhang LiyangTurk RolfBode Nicole M.Jacobi Ashley M.McNeill Matthew S.McQuisten KyleThommandru BerniceBehlke Mark A.
- FASEB 2019: Current Topics in Science Advocacy and PolicyMusser James M.
- Equipment Grants: It's All in the DetailsRichards Heather
- Desorption Electrospray Ionization Mass Spectrometry Imaging: Recent Developments and PerspectivesFerreira ChristinaAlfaro Clint M.Pirro ValentinaCooks R. Graham
- Cross Site Evaluation of Sanger Sequencing Dye ChemistriesPodnar Jessica W.Kolling Fred W.Zeller Molly J.Zhang YanpingThimmapuram JyothiAlekseyev Yuriy O.Deiulio AlexNiece JeremyDeiderick HeatherFan JunXuei XiaolingPantano LorenaLevine Stuart S.Herbert Zachary T.Adams MarieKieleczawa Jan
- Community Colleges: The New Frontier for Advanced Biotechnology Education and Laboratory ServicesSmith ToddFletcher LinneaKesterson AbbeDrake TylerTubon Thomas
- Research Community Action Post FASEB Report on Maximizing the Value of Shared Research ResourcesKigenyi Justine KarungiAuger JulieStemke Katherine HaleGirard IsabelleHugh TomMeyn SusanWinn MaryVinard AndrewRichards HeatherMische Sheenah
- Quality Control of Purified Proteins to Improve Research Data ReproducibilityUebel Stephande Marco ArioBerrow NickLebendiker MarioGarcia-Alai MariaKnauer Stefan H.Lopez-Mendez BlancaMatagne AndreaParret AnnabelRemans KimRaynal Bertrand
- Publications Tracking/AcknowledgementStemke Katherine
- Reproducibility of Indel Formation Rates by Comparing GuideRNA Format and Delivery MethodDelventhal Kym
- Quantifying the Dynamics of L-Kynureninase Orthologs during Catalysis Using HDX-MSD'Arcy SheenaKaramitros Christos S.Stone EverettGeorgiou GeorgeMurray Kyle
- Platinum Sponsor Talk: Genetic Analysis Tools for Genome Editing WorkflowsJackson Stephen
- Native Mass Spectrometry for the Study of Membrane ProteinsHarvey Sophie RWhite WendySchey Kevin LWysocki Vicki H
- Reproducibility as a Value-AddSullivan Ian
- Pathways to Laboratory Sustainability: Green Lab Program, International Institute for Sustainable Laboratories (I2SL) and BETR GrantsRamirez-Aguilar KathrynWridzek PhilMische Sheenah
- Multi-Institutional Core CollaborationsColella TomAmbulos Nicholas P.Chow EricRussell WilliamZwick Michael E.
- Miniaturization of Illumina Library Preparation for High Throughput, Plate-Based Next Generation Sequencing StudiesLevine Stuart
- Methods and Tools for MeRIP-Seq and Nanopore Detection of m6A(m) ChangesMason Christopher E.McIntyre Alexa B.R.Gokhale Nandan S.Cerchietti LeandroHorner Stacy M.
- Mentoring Skills for ABRF Members and Corporate PartnersFletcher Luellen
- Lean Tools for Enhanced Core ManagementFox Jay WCarnahan RobMcHugh ThomasSinclair Elizabeth
- Metagenomics Research Group Study: Characterizing The Whole Cell Microbial Reference Standard Using RNA and DNA-SequencingTighe Scott
- Navigating the Strait between Efficiency and Quality in a Mass Spectrometry FacilityOrsburn BenJenkins Conor
- Journey to Now - The Origins of ABRFNiece Ronald
- Leadership in ScienceWhite A. NicoleMische SheenahWinn Mary
- Mass Cytometry Why MultiplexBurks Jared K.
- Simple and Scalable Genome Analysis with Transposase Enzyme Linked Long-Read Sequencing (TELL-Seq): From Haplotype Phasing to De Novo Assembly in a TubeChen Tom
- Serial Block Face SEM ServiceSalisbury Jeffrey L.Sanders MarkCharlesworth JonChristensen TraceJaspersen Adam
- Chemical Proteomic Strategy Utilizing a Chloroalkane Capture Tag for Target DiscoveryOhana Rachel
- Can You Deal with Sample and Experimental Diversity in a Proteomics Core While Being Nimble and Efficient? Answer= Not ReallyPhinney Brett S.
- Combining High Resolution Whole Genome Mapping with Long Read DNA Sequencing for Microbial Genome AssemblyOliver John
- Challenges of Establishing a New Imaging Facility: The Floating Core DiariesMontero-Llopis Paula
- A Multi-Platform Assessment of DNA Sequencing Reproducibility Using Human and Bacterial GenomesFoox Jonathan
- Whole Organ Vascular Imaging with Cellular ResolutionPingel ThomasSchroeer UweKiefer Friedemann
- Active Organic Solvent-Free Paraffin Removal is the Key to Standardizing Extraction of Biomolecules from FFPE TissuesKhoja Hamid
- Analysis of Health Using Advanced TechnologiesSnyder Michael
- Whole Genome Sequencing of Microbial Communities for Scaling Microbiome and Metagenomic StudiesLai JeffersonHutto ScottLesnick John
- Vermont Genetics Network Proteomics FacilityLam Ying WaiDeng BinHood Catrina
- Dynamic Actin Cycling Regulates Mitochondrial DynamicsHolzbaur Erika
- JAX Survey of Bioinformatics and Datascience Cores Revealed ‘Collaborative and Embedded’ Model is Rare but a Desirable Path ForwardKaruturi Krishna
- Implementation and Application of Data-Independent Acquisition Workflows in a Mass Spectrometry FacilitySchilling Birgit
- Ultra-Long Read Nanopore Sequencing Methods for MetagenomicsQuick Josh
- The Future of ABRF: Strategic Planning and BrandingChitty Andrew
- Combination of scRNA-seq Strategies to Untangle Complex Cell PopulationsYángüez Emilio
- SysMet: A Tool for Integrative Systems MetabolomicsNezami Ranjbar Mohammad R.Fan ZilingGao YanRessom Habtom
- Transcriptome Profiling of Cell Lineage at Single Cell Resolution with Rainbow-SeqBiase Fernando
- Whole Exome Sequencing Analysis of Archival Formalin Fixed Paraffin Embedded Tissue (FFPE): Comparison of Different Library Preparation MethodsSingh Prashant Kumar
- Understanding Permafrost Dynamics Using Metagenomics and Systems BiologyBarbato Robyn A.
- Single Molecule Localization Microscopy for Quantitative BiologyNicovich Rusty
- Simultaneously DNA and RNA Extraction from Formalin-Fixed Paraffin Embedded (FFPE) TissueWei HanSmith ZachDoh JungAdediran Jimmy
- The MOSAIC Standards Challenge: Capturing the Extent and Sources of Variability in NGS-Based Microbiome Profiling Protocols and AnalysesJackson Scott
- Steps Towards Providing Mouse Behavior Analysis Across Multiple Core FacilitiesItano Michelle S.
- Platinum Sponsor Talk: New Options for Methylome Analysis and RNA DepletionStewart Fiona
- Chemical Proteomic Strategy Utilizing a Chloroalkane Capture Tag for Target DiscoveryOhana Rachel
- Can You Deal with Sample and Experimental Diversity in a Proteomics Core While Being Nimble and Efficient? Answer= Not ReallyPhinney Brett S.
- Combining High Resolution Whole Genome Mapping with Long Read DNA Sequencing for Microbial Genome AssemblyOliver John
- Challenges of Establishing a New Imaging Facility: The Floating Core DiariesMontero-Llopis Paula
- A Multi-Platform Assessment of DNA Sequencing Reproducibility Using Human and Bacterial GenomesFoox Jonathan
- Transcriptome Profiling of Cell Lineage at Single Cell Resolution with Rainbow-SeqBiase Fernando
- Whole Exome Sequencing Analysis of Archival Formalin Fixed Paraffin Embedded Tissue (FFPE): Comparison of Different Library Preparation MethodsSingh Prashant Kumar
- Understanding Permafrost Dynamics Using Metagenomics and Systems BiologyBarbato Robyn A.
- Single Molecule Localization Microscopy for Quantitative BiologyNicovich Rusty
- Serial Block Face SEM ServiceSalisbury Jeffrey L.Sanders MarkCharlesworth JonChristensen TraceJaspersen Adam
- The MOSAIC Standards Challenge: Capturing the Extent and Sources of Variability in NGS-Based Microbiome Profiling Protocols and AnalysesJackson Scott
- Steps Towards Providing Mouse Behavior Analysis Across Multiple Core FacilitiesItano Michelle S.
- Platinum Sponsor Talk: New Options for Methylome Analysis and RNA DepletionStewart Fiona
- Integration and Validation of RNA ISH, Multispectral Imaging and Analysis Protocols into a Core EnvironmentSelvaraj ShanmugapriyaMezzano ValeriaDabovic BrankaLoomis Cindy
- Keanu: A Novel Visualization Tool to Explore Biodiversity in MetagenomesVinas NataliaThrash AdamII Mark ArickJones RobertDouglas ThomasPerkins Edward
- Adoption of Evaluation and Assessment Data Management Tools for a Growing Core Facility with Program GrantsSmith Diane B.Jibben Barbara J.Yarnell Tracy L.Oxford Julia T.
- ampPD: An Automated Primer Design Tool for Highly Multiplexed, Single-Tube Tiled Amplicon PCR for Resequencing of Tumor SamplesZillmann MartinKe YueLodato NicholasPrasol MelanieWang Zhaohui
- An Unbiased Comparison of BigDye Terminator and BrilliantDye TerminatorPetros C.M.Walls D.M.Munger H.J.Wei C-L
- Analysis of Human Nuclear Protein Complexes by Quantitative Mass Spectrometry ProfilingAryal UmaConnelly Katelyn E.Hedrick VictoriaPaschoal Sobreira Tiago JoseDykhuizen Emily C.
- Absolute Quantitation of the N-Linked Glycans from Biotheraputic IgGsOrlando RonPopov MarlaLibert BenBoyes Barry
- Accelerating High-Throughput Screening with FirePlexAtabakhsh E.
- cellPhoresis: A Dielectrophoresis Based Technique for Rapid, Nondestructive Cell Separation and AnalysisGencoglu AytugHuey ShannonCrowther ClaireHayes MarkCharlot David
- Cross Site Evaluation of Sanger Sequencing Dye ChemistriesPodnar Jessica W.
- Automated Single Cell Tracking of In Vitro Multi-Cellular Morphogenesis Predicts Pluripotent Stem Cell Fate DecisionsJoy DavidLibby AshleyMcDevitt Todd
- Impact of Fecal Microbiome Extraction Technique on Relative Abundance of Genera within Expected and Unexpected CommunitiesChill SamanthaVogtman EmilyAbnet ChristianSinha RashmiHicks BelyndaJones KristineHutchinson AmyDagnall Casey
- High-Throughput, Low Volume gDNA Extraction from Whole Blood Enabled by Covaris Adaptive Focused Acoustics (AFA) and oneTUBE-10Jansen LaurenProcess VanessaAmirault KristopherGerrin SeanThomann Ulrich
- Liquid Biopsy Quality Control and the Importance of Plasma Quality, Sample Preparation, and Library Input for Next Generation Sequencing AnalysisSaunders Hannah Elizabeth
- Research Resource Identifiers (RRID) for Core Facilities and Research EquipmentMundoma ClaudiusRuhs NicholasMeth MichaelGlerum AnnieLopez MarkJulian Renaine
- Sequencing Complex Genomes with PromethION Technology in a Core SettingGoodwin SaraMcCombie W. Richard
- RipTide High Throughput NGS Library Prep for Genotyping in PopulationsSiddique AzeemSuckow GaiaOrdoukhanian PhillipHead SteveHomer NilsHernandez AlvaroBrown KeithGlick LiorBaruch KobiDoran Paul
- Reproducibility of Indel Formation Rates by Comparing GuideRNA Format and Delivery MethodDelventhal KymMiller BrandonPruett-Miller Shondra M.Modarai ShirinPorter Shaina N.Regan Maureen R.Sergison Elizabeth
- RipTide Ultra High-Throughput Rapid DNA Library Preparation for Next Generation SequencingSiddique AzeemSuckow GaiaBahena JorgeHomer NilsOrdoukhanian PhillipHead SteveBrown Keith
- Rigor and Reproducibility in Shared Resources: ABRF Committee on Core Rigor and Reproducibility Survey UpdateKnudtson Kevin L.Hegstad-Davies Rebecca L.Fisher Nancy C.Hicks BelyndaMeyn Susan M.Mische Sheenah M.Sol-Church KatiaWeis-Garcia Frances
- Sample Quality Control of Cell-Free DNAViering Elisa
- Core Analysis Viewer: Simplifying Omics Data Delivery, Training, and InterpretationPolson Shawn W.Zheng LongqianBhavsar Jaysheel D.
- Bead-Linked Transposome Technology: Ushers a Next Era in Library Prep Enabling a Normalization-Free Workflow for Whole Genome and Flexible Targeted ResequencingKhanna AnuBruinsma SteveBurgess JoshuaCzyz AgataMorrell NatalieSchlingman DanielBallenger KatieMeinholz HeatherFreeberg LindsayGrunenwald HaiyingGormley NiallBhattacharjee GourabSchroth Gary P
- Characterization and Cytotoxic Activity of Non-Specific Lipid Transfer Protein (NsLTP) from Fennel (Foeniculum vulgare) SeedsMegeressa Mekdes
- Comparison of Three Libraries for 10x Genomics Single Cell Immune TCR Repertoire ProfilingChen YunxinPollock David P.Qi Yuanlm Jin SeonSu XiaopingThompson Erika J.
- Comprehensive Detection of Germline and Somatic Structural Mutation in Cancer Genomes by Bionano Genomics Optical MappingPang A.W.C.Lee J.Anantharaman T.Lam E.T.Hastie A.Borodkin M.
- Automated Genomic DNA Extraction from Large Volume Whole BloodWei HanPares RandyLiu LiBlair Mary
- Automated Unbiased Metagenomic DNA Extraction for Long-Read SequencingTjokrosurjo JoshuaGonzalez AngelLin KevinTang ShuiquanJia Xi Yu
- Automating Genomic DNA Extraction from Whole Blood and Serum with GenFind V3 on the Biomek i7 Hybrid Liquid Handling SystemPares RandyLiu LiWei HanBlair Mary
- Automation of IDT Probe-Based Targeted Enrichment Workflow Using xGen Lockdown Probes in a High-Throughput LabGearhart JessicaMarosy BethCraig BrianDoheny Kim
- Automated Library Preparation for the MCI Advantage Cancer Panel at Miami Cancer Institute Utilizing the Beckman Coulter Biomek i5 Span-8 Liquid HandlerWei Q.Shen W.Medellin A.Smith Zach
- Integration and Validation of RNA ISH, Multispectral Imaging and Analysis Protocols into a Core EnvironmentSelvaraj ShanmugapriyaMezzano ValeriaDabovic BrankaLoomis Cindy
- An Unbiased Comparison of BigDye Terminator and BrilliantDye TerminatorPetros C.M.Walls D.M.Munger H.J.Wei C-L
- Analysis of Human Nuclear Protein Complexes by Quantitative Mass Spectrometry ProfilingAryal UmaConnelly Katelyn E.Hedrick VictoriaPaschoal Sobreira Tiago JoseDykhuizen Emily C.
- Absolute Quantitation of the N-Linked Glycans from Biotheraputic IgGsOrlando RonPopov MarlaLibert BenBoyes Barry
- Accelerating High-Throughput Screening with FirePlexAtabakhsh E.
- cellPhoresis: A Dielectrophoresis Based Technique for Rapid, Nondestructive Cell Separation and AnalysisGencoglu AytugHuey ShannonCrowther ClaireHayes MarkCharlot David
- Cross Site Evaluation of Sanger Sequencing Dye ChemistriesPodnar Jessica W.
- Automated Single Cell Tracking of In Vitro Multi-Cellular Morphogenesis Predicts Pluripotent Stem Cell Fate DecisionsJoy DavidLibby AshleyMcDevitt Todd
- Core Analysis Viewer: Simplifying Omics Data Delivery, Training, and InterpretationPolson Shawn W.Zheng LongqianBhavsar Jaysheel D.
- Bead-Linked Transposome Technology: Ushers a Next Era in Library Prep Enabling a Normalization-Free Workflow for Whole Genome and Flexible Targeted ResequencingKhanna AnuBruinsma SteveBurgess JoshuaCzyz AgataMorrell NatalieSchlingman DanielBallenger KatieMeinholz HeatherFreeberg LindsayGrunenwald HaiyingGormley NiallBhattacharjee GourabSchroth Gary P
- Characterization and Cytotoxic Activity of Non-Specific Lipid Transfer Protein (NsLTP) from Fennel (Foeniculum vulgare) SeedsMegeressa Mekdes
- Imaging in Developmental Biology: An Essential Tool with No InstructionsMarques GuillermoPengo ThomasSanders Mark A.
- Immuno-Biotechnology and Bioinformatics in Community CollegesSmith ToddPorter SandraKovarik Dina
- Long Fragments Achieve Lower Base Quality in Illumina Paired-End SequencingOpitz LennartTan GeAquino CatharineSchlapbach RalphRehrauer Hubert
- Leveraging the Versatility of the Chicken Embryo Chorioallantoic Membrane (CAM) Model as a Tool in the Fight Against CancerVillanueva HugoVillanueva MarianaFrancisco SandraLiu Hsuan-ChenSikora Andrew G.
- K-means Spectral Unmixing for Multi-channel Imaging and Image Analysis Platform at a Core FacilityGao YurongMcRae Tristan
- Linking the Resistome to the Microbiome: A Culture-Free Method Links Plasmid, Virus, and Antimicrobial Resistance Genes to their Hosts in Complex Microbial PopulationsLiachko IvanPress MaximilianStalder ThibaultBickhart DerekKoren SergeyTop EvaPhillippy AdamSmith TimothySullivan Shawn
- LipidQuan: A Plug and Play Solution for Targeted Lipid ProfilingDhungana SurajIsaac GiorgisMunjoma NyashaGethings Lee A.Plumb Robert S.
- ABRF-sPRG 2018-2019: Development and Characterization of a Stable-Isotope Labeled Phosphopeptide StandardHerren AnthonySearle BrianHawke DavidLee KimberlyKoller AntoniusLeib RyanPhinney BrettChien AllisPatel Bhavin
- A Robust, Streamlined, Enzyme-based DNA Library Preparation Method Amenable to a Wide Range of DNA InputsHoppers AmandaApone LynnePanchapakesa VaishnaviMcKay KarenLiu PingfangSong ChenSumner ChristineRozzi ChristineArn MelissaSanford JonathanLanghorst Bradley W.Shtatland TimurStewart Fiona J.Munafo DanielaDimalanta Eileen T.Davis Theodore B.
- A Metagenomic Analysis of Environmental and Clinical Samples Using a Secure Hybrid Cloud SolutionOunit RachidMason ChrisLonardi StefanoO'Hara Niamh
- A Low DNA Input Protocol for High-Quality PacBio De Novo Genome AssembliesDuncan TurnerKingan Sarah B.Lambert Christine C.Baybayan PrimoKorlach Jonas
- A Fluorescence-Based Method for Accurate Quantification of NGS Libraries in MinutesSaraiya Ashesh A.Parikh ChaitaliLi BinHeath Joe Don
- A 12 Minute, Single Tube, Nanogram Input Library PrepDunham JosephAngermayer ChristopherHarkins Timothy
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Jessica W. P. Cross Site Evaluation of Sanger Sequencing Dye Chemistries. JBT. 2019;30(Suppl):S9-S10.